{"id":2479,"date":"2021-06-04T13:13:07","date_gmt":"2021-06-04T13:13:07","guid":{"rendered":"https:\/\/rnca.fccn.pt\/?page_id=2479"},"modified":"2026-03-19T10:56:24","modified_gmt":"2026-03-19T10:56:24","slug":"publicacoes","status":"publish","type":"page","link":"https:\/\/rnca.fccn.pt\/en\/publicacoes\/","title":{"rendered":"Publications"},"content":{"rendered":"<div style=\"height:50px\" aria-hidden=\"true\" class=\"wp-block-spacer\"><\/div>\n\n\n\n<h2 class=\"wp-block-heading has-black-color has-text-color\"><strong>Publications associated with Advanced Computing Projects<\/strong><\/h2>\n\n\n\n<div style=\"height:36px\" aria-hidden=\"true\" class=\"wp-block-spacer\"><\/div>\n\n\n\n<div class=\"wp-block-columns has-background is-layout-flex wp-container-core-columns-is-layout-9d6595d7 wp-block-columns-is-layout-flex\" style=\"background-color:#e4e8f2\">\n<div class=\"wp-block-column is-layout-flow wp-block-column-is-layout-flow\">\n<div class=\"wp-block-columns is-layout-flex wp-container-core-columns-is-layout-9d6595d7 wp-block-columns-is-layout-flex\">\n<div class=\"wp-block-column is-layout-flow wp-block-column-is-layout-flow\">\n<h3 class=\"wp-block-heading\"><strong>How to reference the FCT and its computational project in scientific articles or conferences? <\/strong><\/h3>\n\n\n\n<p class=\"has-black-color has-text-color translation-block\">Standard example in English for national projects: <em>\u201cThis work was supported <em><em><em><em>by computational resources from<\/em><\/em><\/em><\/em><\/em> <em><em>FCT IP, approved under the Project <em>\u2013 DOI<\/em> (if known)<\/em><\/em> <em>\u201c<\/em><\/p>\n\n\n\n<ul class=\"wp-block-list\">\n<li>Specific example for national projects in DEUCALION: <em>\u201cThis work was supported by<em><em><em><em><em><em>and<\/em><\/em><\/em><\/em><\/em> FCT IP under Project <em>\u2013 DOI<\/em> (if known)<\/em><\/em> \u2013<em> at Deucalion supercompute<em>r, <\/em>jointly<em> funded<\/em><\/em> <em>by EuroHPC JU and Portugal.\u201d<\/em><\/li>\n<\/ul>\n\n\n\n<ul class=\"wp-block-list\">\n<li>Specific example for national projects in MARENOSTRUM 5: <em>\u201cThis work was <em>supported <em>by FCT IP under Project <em>\u2013 DOI<\/em> (if known)<\/em><\/em> \u2013 at MareNostrum 5 <em>supercomputer<\/em>, jointly <em>funded<\/em><\/em> <em>by EuroHPC JU, Portugal, Turkey and Spain.\u201d<\/em><\/li>\n<\/ul>\n\n\n\n<p class=\"has-black-color has-text-color\">If your publications resulting from an FCT advanced computing project are not listed on this page, please send the details to computacao-avancada@fccn.pt.<\/p>\n<\/div>\n<\/div>\n<\/div>\n<\/div>\n\n\n\n<div style=\"height:61px\" aria-hidden=\"true\" class=\"wp-block-spacer\"><\/div>\n\n\n\n<h2 class=\"wp-block-heading\"><mark style=\"background-color:rgba(0, 0, 0, 0)\" class=\"has-inline-color has-vivid-green-cyan-color\">2026<\/mark><\/h2>\n\n\n\n<ul class=\"wp-block-list\">\n<li>S. Mal, S. Das, N. Bhartia, DS Nesterov. <em>Cu(ii)-catalyzed Friedel\u2013Crafts reaction of 2-thiopyrimidine derivatives with aldehydes<br>utilizing water as cocatalyst in the presence of surfactant: elucidation of the role of water on reaction mechanism and tautomerism<\/em>. Org. Biomol. Chem., 2026, 24, 2332-2344. DOI: <a href=\"https:\/\/doi.org\/10.1039\/D6OB00101G\">https:\/\/doi.org\/10.1039\/D6OB00101G<\/a> <strong>(FCT\/CPCA\/2023\/01 \u2013 2023.10683.CPCA.A1@HPC-U\u00c9)<\/strong><\/li>\n\n\n\n<li>Anne Liong, Leandro de Mattos Pereira, Pedro N. Le\u00e3o. <em>Diversity of FAAL enzymes and prediction of their substrate specificity using FAALPred<\/em>21 January 2026.  <a href=\"https:\/\/onlinelibrary.wiley.com\/doi\/10.1002\/pro.70468\">https:\/\/onlinelibrary.wiley.com\/doi\/10.1002\/pro.70468<\/a> DOI: <a href=\"https:\/\/doi.org\/10.1002\/pro.70468\"> https:\/\/doi.org\/10.1002\/pro.70468<\/a> <strong>(CPCA-IAC\/AV\/591374\/2023 \u2013 &#039;ARTIFICIAL INTELLIGENCE IN GOOGLE CLOUD (2nd edition)&#039;<\/strong>)<\/li>\n<\/ul>\n\n\n\n<h2 class=\"wp-block-heading\"><br><mark style=\"background-color:rgba(0, 0, 0, 0)\" class=\"has-inline-color has-vivid-green-cyan-color\">2025<\/mark><\/h2>\n\n\n\n<ul class=\"wp-block-list\">\n<li>Diogo V., David R. Matos, Miguel L. Pardal, Miguel C.. AI-Generated Distributed Algorithms: Paving the Way for More Dependable Distributed Systems. 2025. Conference: 20th European Dependable Computing Conference \u2013 Fast Abstract. <a href=\"https:\/\/ieeexplore.ieee.org\/document\/11144868\">https:\/\/ieeexplore.ieee.org\/document\/11144868<\/a> DOI of related projects: <strong>10.54499\/2022.73688.CPCA.A0 and 10.54499\/2024.07087.CPCA.A1@INCD\/CNCA<\/strong><\/li>\n\n\n\n<li>K. Tan\u010d\u00e1rov\u00e1, IV Voroshylova, L. Bucinsky, M. Mal\u010dek, Hydrogen binding on the B36 borophene nanoflake decorated with first row transition metal atoms: DFT, QTAIM and AIMD study, FlatChem, 49, 2025, 100799, ISSN 2452-2627, <a href=\"https:\/\/doi.org\/10.1016\/j.flatc.2024.100799\">https:\/\/doi.org\/10.1016\/j.flatc.2024.100799<\/a> (<strong>Project 2023.10811.CPCA.A2@INCD\/CNCA<\/strong>)<\/li>\n\n\n\n<li>I. Gbadamosi, S. Binias, B. Gielniewski, R. Magno, I. Duarte, A. Jawaid. Coding and non-coding RNA expression in NSC34 cells following TDP-43 depletion and mutant TDP-43 M337V expression. Scientific Data 12, 1110 (2025). <a href=\"https:\/\/doi.org\/10.1038\/s41597-025-05409-7\">https:\/\/doi.org\/10.1038\/s41597-025-05409-7<\/a> (<strong>Project 2023.10973.CPCA.A2@INCD\/CNCA<\/strong>)<\/li>\n\n\n\n<li>OV Nesterova, OE Bondarenko, AJL Pombeiro, DS Nesterov. Phenoxazinone Synthase-Like Catalytic Activity of Bi- and Trinuclear Copper(II) Complexes with 2-Benzylethanolamine: Experimental and Theoretical Investigations. ChemPlusChem, 2025, 90, e202400613.<a href=\"https:\/\/doi.org\/10.1002\/cplu.202400613\"> DOI 10.1002\/cplu.202400613<\/a> (<strong>Project 2023.10683.CPCA.A1@HPC-U\u00c9<\/strong>)<\/li>\n<\/ul>\n\n\n\n<ul class=\"wp-block-list\">\n<li>O.Yu. Vassilyeva, OV Nesterova, A.Bie\u0144ko, UK Komarnicka, EA Buvaylo, SM Vasylieva, BW Skelton, DS Nesterov. Heterometallic CuCd and Cu2Zn complexes with o-vanillin and its Schiff-base derivative: slow magnetic relaxation and catalytic activity associated with Cu(II) centers. Dalton Trans., 2025, 54, 6117. <a href=\"https:\/\/doi.org\/10.1039\/d4dt03571b\">DOI: 10.1039\/d4dt03571b<\/a>. (<strong>Projects 2024.02988.CPCA.A0@HPC-U\u00c9<\/strong> and&nbsp;<strong>2023.10683.CPCA.A1@HPC-U\u00c9<\/strong>)<\/li>\n<\/ul>\n\n\n<div class=\"wp-block-image\">\n<figure class=\"aligncenter size-full\"><img loading=\"lazy\" decoding=\"async\" width=\"323\" height=\"204\" src=\"https:\/\/rnca.fccn.pt\/wp-content\/uploads\/2025\/05\/2025-05-27-09_59_11-Heterometallic-CuCd-and-Cu2Zn-complexes-with-o-vanillin-and-its-Schiff-base-deri.png\" alt=\"\" class=\"wp-image-10026\" srcset=\"https:\/\/rnca.fccn.pt\/wp-content\/uploads\/2025\/05\/2025-05-27-09_59_11-Heterometallic-CuCd-and-Cu2Zn-complexes-with-o-vanillin-and-its-Schiff-base-deri.png 323w, https:\/\/rnca.fccn.pt\/wp-content\/uploads\/2025\/05\/2025-05-27-09_59_11-Heterometallic-CuCd-and-Cu2Zn-complexes-with-o-vanillin-and-its-Schiff-base-deri-300x189.png 300w\" sizes=\"auto, (max-width: 323px) 100vw, 323px\" \/><figcaption class=\"wp-element-caption\"><em>in O.Yu. Vassilyeva et al., 2025<\/em><\/figcaption><\/figure>\n<\/div>\n\n\n<ul class=\"wp-block-list\">\n<li>Pablo J. Bilbao, Thales Silva, Lu\u00eds O. Silva. Radiative cooling induced coherent maser emission in relativistic plasmas. 2025. Sci. Adv. 11, eadt8912. <a href=\"https:\/\/doi.org\/10.1126\/sciadv.adt8912\" target=\"_blank\" rel=\"noreferrer noopener\">https:\/\/doi.org\/10.1126\/sciadv.adt8912<\/a><strong> (Project 2024.11062.CPCA.A3@DEUCALION)<\/strong><\/li>\n<\/ul>\n\n\n<div class=\"wp-block-image\">\n<figure class=\"aligncenter size-full\"><img loading=\"lazy\" decoding=\"async\" width=\"698\" height=\"242\" src=\"https:\/\/rnca.fccn.pt\/wp-content\/uploads\/2025\/04\/371DC69A-29E2-42E0-949E-6DD052384295.png\" alt=\"\" class=\"wp-image-9805\" srcset=\"https:\/\/rnca.fccn.pt\/wp-content\/uploads\/2025\/04\/371DC69A-29E2-42E0-949E-6DD052384295.png 698w, https:\/\/rnca.fccn.pt\/wp-content\/uploads\/2025\/04\/371DC69A-29E2-42E0-949E-6DD052384295-300x104.png 300w\" sizes=\"auto, (max-width: 698px) 100vw, 698px\" \/><figcaption class=\"wp-element-caption\"><em>in Bilbao et al., 2025<\/em><\/figcaption><\/figure>\n<\/div>\n\n\n<ul class=\"wp-block-list\">\n<li>Mendes, SA, Sinval, J., Cadime, I., Rodrigues, B., Inman, R., Neves-McCain, JR, &amp; La Salle-Finley, TP 2025. The Georgia School Personnel Survey of school climate: Validity evidence from a sample of Portuguese teachers and support staff. British Educational Research Journal.&nbsp;<a href=\"https:\/\/doi.org\/10.1002\/berj.4170\" target=\"_blank\" rel=\"noreferrer noopener\">https:\/\/doi.org\/10.1002\/berj.4170<\/a> (<strong>Project<\/strong> <strong>2024.10162.CPCA.A0@DEUCALION<\/strong>)<\/li>\n\n\n\n<li>B. Silva, L. Guerreiro Lopes. GPU acceleration of the GWO optimization algorithm: Application to the solution of large nonlinear equation systems. Concurrency and Computation: Practice and Experience 2025, 37(6-8), e70043.&nbsp;<a href=\"https:\/\/doi.org\/10.1002\/cpe.70043\" target=\"_blank\" rel=\"noreferrer noopener\">https:\/\/doi.org\/10.1002\/cpe.70043<\/a>&nbsp;<strong>(Projects: 2022.57951.CPCA.A0@INCD and 2023.09611.CPCA.A1@INCD\/CNCA)<\/strong><\/li>\n\n\n\n<li>B. Silva, L. Guerreiro Lopes, F. Mendon\u00e7a. Multithreaded and GPU-based implementations of a modified particle swarm optimization algorithm with application to solving large-scale systems of nonlinear equations. Electronics 2025, 14(3), 584.&nbsp;<a href=\"https:\/\/doi.org\/10.3390\/electronics14030584\" target=\"_blank\" rel=\"noreferrer noopener\">https:\/\/doi.org\/10.3390\/electronics14030584<\/a>&nbsp;<strong>(Projects: 2023.09611.CPCA.A1 and 2024.07086.CPCA.A1@INCD\/CNCA)<\/strong><\/li>\n<\/ul>\n\n\n\n<div style=\"height:85px\" aria-hidden=\"true\" class=\"wp-block-spacer\"><\/div>\n\n\n\n<h2 class=\"wp-block-heading\"><mark style=\"background-color:rgba(0, 0, 0, 0)\" class=\"has-inline-color has-vivid-green-cyan-color\">2024<\/mark><\/h2>\n\n\n\n<ul class=\"wp-block-list\">\n<li>IFM Costa, CHJ Franco, DS Nesterov, V. Andr\u00e9, LCJ Pereira, AM Kirillov. Alkoxy-bridged Dicopper(II) Cores Meet Tetracyanonickelate Linkers: Structural, Magnetic, and Theoretical Investigation of Cu\/Ni Coordination Polymers. J. Phys. Chem. C, 2024, 128, 6053-6064. DOI: <a href=\"https:\/\/doi.org\/10.1021\/acs.jpcc.3c08112\" target=\"_blank\" rel=\"noreferrer noopener\">https:\/\/doi.org\/10.1021\/acs.jpcc.3c08112 <\/a><strong>(Project 2022.74087.CPCA.A0@HPC-U\u00c9)<\/strong><\/li>\n\n\n\n<li>IFM Costa, CHJ Franco, DS Nesterov, V. Andr\u00e9, LCJ Pereira, AM Kirillov. Exploring the Assembly, Structures, and Magnetism of Cyanometallate-Driven Coordination Polymers. Christ. Growth Des., 2024, 24, 7466-7476. DOI: <a href=\"https:\/\/doi.org\/10.1021\/acs.cgd.4c00557\" target=\"_blank\" rel=\"noreferrer noopener\">https:\/\/doi.org\/10.1021\/acs.cgd.4c00557<\/a> <strong>(<strong>Project <\/strong>2022.74087.CPCA.A0@HPC-U\u00c9)<\/strong><\/li>\n<\/ul>\n\n\n<div class=\"wp-block-image\">\n<figure class=\"aligncenter size-full\"><img loading=\"lazy\" decoding=\"async\" width=\"515\" height=\"194\" src=\"https:\/\/rnca.fccn.pt\/wp-content\/uploads\/2025\/04\/F872B6CB-2E3A-4340-8D77-141D60457EEA-1.png\" alt=\"\" class=\"wp-image-9817\" srcset=\"https:\/\/rnca.fccn.pt\/wp-content\/uploads\/2025\/04\/F872B6CB-2E3A-4340-8D77-141D60457EEA-1.png 515w, https:\/\/rnca.fccn.pt\/wp-content\/uploads\/2025\/04\/F872B6CB-2E3A-4340-8D77-141D60457EEA-1-300x113.png 300w\" sizes=\"auto, (max-width: 515px) 100vw, 515px\" \/><figcaption class=\"wp-element-caption\"><em>in Costa IFM et al 2024<\/em><\/figcaption><\/figure>\n<\/div>\n\n\n<ul class=\"wp-block-list\">\n<li>Bruno Silva, Luiz Guerreiro Lopes, F\u00e1bio Mendon\u00e7a. Parallel GPU-acceleration of metaphor-less optimization algorithms: Application for solving large-scale nonlinear equation systems. Appl. Sci. 2024, 14(12), 5349.&nbsp;<a href=\"https:\/\/doi.org\/10.3390\/app14125349\" target=\"_blank\" rel=\"noreferrer noopener\">https:\/\/doi.org\/10.3390\/app14125349<\/a>&nbsp;<strong>(<strong>Project<\/strong>s: 2022.57951.CPCA.A0@INCD and 2023.09611.CPCA.A1@INCD)<\/strong><\/li>\n\n\n\n<li>Bruno Nevado, Guy W. Atchison, Edwin L. Bridges, Steve Orzell, Dmitry Filatov, Colin E. Hughes. Pleistocene diversification of unifoliolate-leaved Lupinus (Leguminosae: Papilionoideae) in Florida. 2024. Molecular Ecology, Volume 33, Issue 3. <a href=\"https:\/\/doi.org\/10.1111\/mec.17232\" target=\"_blank\" rel=\"noreferrer noopener\">https:\/\/doi.org\/10.1111\/mec.17232<\/a> <strong>(Project: 2022.15825.CPCA.A2@INCD)<\/strong><\/li>\n\n\n\n<li>Rui M. P. Pereira, Marian C. Istrate, F\u00e1bio G. Figueiras, Veniero Lenzi, Bruna M. Silva, Majdi Benamara, Konstantin N. Romanyuk, Corneliu Ghica, Bernardo G. Almeida, Lu\u00eds Marques, Mario Pereira, Jos\u00e9 P. B. Silva. Phase transitions in ferroelectric ZrO2 thin films. 2024. Materials Science in Semiconductor Processing. Volume 172. 108102. <a href=\"https:\/\/doi.org\/10.1016\/j.mssp.2023.108102\" target=\"_blank\" rel=\"noreferrer noopener\">https:\/\/doi.org\/10.1016\/j.mssp.2023.108102<\/a> <strong>(Project: CPCA\/A1\/415075\/2022@HPC-EU)<\/strong><\/li>\n\n\n\n<li>R. Nobre, A. Ilic, S. Santander-Jim\u00e9nez and L. Sousa, IPU-EpiDet: Identifying Gene Interactions on Massively Parallel Graph-Based AI Accelerators. 2024 IEEE International Parallel and Distributed Processing Symposium (IPDPS), San Francisco, CA, USA. <a href=\"https:\/\/doi.org\/10.1109\/IPDPS57955.2024.00062\" target=\"_blank\" rel=\"noreferrer noopener\">https:\/\/doi.org\/10.1109\/IPDPS57955.2024.00062<\/a> <strong>(Project CPCA-IAC\/AV\/478750\/2022@GCP)<\/strong><\/li>\n\n\n\n<li>R. Chertovskih, N. Pogodaev, M. Staritsyn and A. Pedro Aguiar, \u201cOptimal Control of Diffusion Processes: Infinite-Order Variational Analysis and Numerical Solution,\u201d in IEEE Control Systems Letters, vol. 8, pp. 1469-1474, 2024, <a href=\"https:\/\/doi.org\/10.1109\/LCSYS.2024.3410632\">https:\/\/doi.org\/10.1109\/LCSYS.2024.3410632<\/a>  <strong>(Project 2022.15706.CPCA.A2@HPC-EU)<\/strong><\/li>\n\n\n\n<li>Z\u00f3zimo, AC, Pinheiro, LV, Chenneveau, L., Manz, A., Garzon, JL, Fortes, C. (2024). Deep learning framework to use complex models in operational forecast systems, in Proceedings 38th ICCE, Rome, 8-14 September.<strong> (Project 2022.15851.CPCA.A2@HPC-EU)<\/strong><\/li>\n\n\n\n<li>Gomes T., Vaz G., Maximiano A., Sileo L., Krasilnikov V. \u201cOn the Usage of PANS for the CFD Simulation of Wind Turbines\u201d. Proceedings of the 9th European Congress on Computational Methods in Applied Sciences and Engineering, 2024, <a href=\"https:\/\/doi.org\/10.23967\/eccomas.2024.001\">https:\/\/doi.org\/10.23967\/eccomas.2024.001<\/a> <strong>(Project 2022.15647.CPCA.A2@LCA-UC)<\/strong><\/li>\n\n\n\n<li>Muralha J., Gomes T., Maximiano A., Vaz G. \u201cModelling turbine-turbine interactions using techniques learned from Naval Engineering\u201d. Proceedings of the 26th Numerical Towing Tank Symposium, 2024, URL: <a href=\"https:\/\/www.uni-due.de\/imperia\/md\/content\/inam\/nutts_2024_proceedings.pdf\">https:\/\/www.uni-due.de\/imperia\/md\/content\/inam\/nutts_2024_proceedings.pdf<\/a>  <strong>(Project 2022.15647.CPCA.A2@LCA-UC)<\/strong><\/li>\n\n\n\n<li>Ricardo Gama and Daniel Fuertes and Carlos R. del-Blanco and Hugo L. Fernandes, \u201cMulti-Agent Environments for Vehicle Routing Problems\u201d \u2013 <a href=\"https:\/\/arxiv.org\/pdf\/2411.14411\">https:\/\/arxiv.org\/pdf\/2411.14411<\/a> <strong>(Project 2023.13303.CPCA.A0@INCD)<\/strong><\/li>\n\n\n\n<li>Couto C. et al. Machine-learning aided fire detection systems \u2013 an opportunity for early response and improved safety. 2024. https:\/\/doi.org\/10.57650\/INNOVACTION\/2024.12<strong> (Project 2023.10774.CPCA.A1<strong>@LCA-UC<\/strong>)<\/strong><\/li>\n<\/ul>\n\n\n\n<div style=\"height:70px\" aria-hidden=\"true\" class=\"wp-block-spacer\"><\/div>\n\n\n\n<h2 class=\"wp-block-heading\"><mark style=\"background-color:rgba(0, 0, 0, 0)\" class=\"has-inline-color has-vivid-green-cyan-color\">2023<\/mark><\/h2>\n\n\n\n<ul class=\"wp-block-list\">\n<li>Igor A. Rodrigues Lopes, Miguel Vieira de Carvalho, Jo\u00e3o A. Marques da Silva, Rui P. Cardoso Coelho, Francisco M. Andrade Pires. Second-order homogenization of crystal plasticity and martensitic transformation. 2023. European Journal of Mechanics \u2013 A\/Solids. Volume 102. 105104. <a href=\"https:\/\/doi.org\/10.1016\/j.euromechsol.2023.105104\" target=\"_blank\" rel=\"noreferrer noopener\">https:\/\/doi.org\/10.1016\/j.euromechsol.2023.105104<\/a> <strong>(Project:<\/strong> <strong>CPCA\/A1\/420917\/2021@INCD)<\/strong><\/li>\n\n\n\n<li>Ana Martins, MG Scotto, CH Weiss, S\u00f3nia Gouveia. Space-time integer-valued ARMA modeling for time series of counts. Electronic Journal of Statistics. 2023. 17(2):3472-3511. <a href=\"\/en\/10.1214\/23-EJS2183\/\" target=\"_blank\" rel=\"noreferrer noopener\">DOI:10.1214\/23-EJS2183<\/a> <strong>(Project: CPCA\/A1\/449427\/2021@HPC-EU)<\/strong><\/li>\n\n\n\n<li>Marco Zecchetto, Tomoaki Watanabe, Koji Nagata, Carlos B. da Silva. Turbulent\/non-turbulent interfaces in equilibrium and non-equilibrium regions in the absence of mean shear. International Journal of Heat and Fluid Flow. 2023. Volume 103, 109198. <a href=\"https:\/\/doi.org\/10.1016\/j.ijheatfluidflow.2023.109198\" target=\"_blank\" rel=\"noreferrer noopener\">https:\/\/doi.org\/10.1016\/j.ijheatfluidflow.2023.109198<\/a>. <strong>(Project: CPCA\/A1\/455167\/2021@MACC)<\/strong><\/li>\n\n\n\n<li>GF Martins, C. Nascimento, and N. Galamba. Mechanistic Insights into Polyphenols&#039; Aggregation Inhibition of \u03b1-Synuclein and Related Peptides. ACSChem. Neurosci. 2023, 14, 10, 1905\u20131920. <a href=\"https:\/\/doi.org\/10.1021\/acschemneuro.3c00162\" target=\"_blank\" rel=\"noreferrer noopener\">https:\/\/doi.org\/10.1021\/acschemneuro.3c00162<\/a>. <strong>(Project: CPCA\/A1\/470255\/2021@MACC)<\/strong><\/li>\n\n\n\n<li>Pedro R. Figueiredo, Ricardo D. Gonz\u00e1lez, and Alexandra TP Carvalho. Insights into the Degradation of Polymer\u2013Drug Conjugates by an Overexpressed Enzyme in Cancer Cells. <em>Med. Chem.<\/em>&nbsp;2023, 66, 4, 2761\u20132772 <a href=\"https:\/\/doi.org\/10.1021\/acs.jmedchem.2c01781\">https:\/\/doi.org\/10.1021\/acs.jmedchem.2c01781<\/a> <strong>(Project: CPCA\/A2\/4568\/2020@INCD)<\/strong><\/li>\n\n\n\n<li>Bendall, EE, Bagley, RK, Sousa, VC, &amp; Linnen, CR (2022). Faster-haplodiploid evolution under divergence-with-gene-flow: Simulations and empirical data from pine-feeding hymenopterans. Molecular Ecology, 31, 2348- 2366. <a href=\"https:\/\/doi.org\/10.1111\/mec.16410\" target=\"_blank\" rel=\"noreferrer noopener\">https:\/\/doi.org\/10.1111\/mec.16410<\/a> <strong>(Project: 2021.09795.CPCA.A2@INCD)<\/strong><\/li>\n\n\n\n<li>Carvalho, J., Morales, HE, Faria, R., Butlin, RK, &amp; Sousa, VC (2023). Integrating Pool-seq uncertainties into demographic inference. Molecular Ecology Resources, 00, 1-19. <a href=\"https:\/\/doi.org\/10.1111\/1755-0998.13834\" target=\"_blank\" rel=\"noreferrer noopener\">https:\/\/doi.org\/10.1111\/1755-0998.13834<\/a> <strong>(Project: 2021.09795.CPCA.A2@INCD)<\/strong><\/li>\n\n\n\n<li>Carvalho, J., Faria, R., Butlin, RK, &amp; Sousa, VC (2023). poolHelper: An R package to help in designing Pool-Seq studies. Methods in Ecology and Evolution, 00, 1- 8. <a href=\"https:\/\/doi.org\/10.1111\/2041-210X.14185\" target=\"_blank\" rel=\"noreferrer noopener\">https:\/\/doi.org\/10.1111\/2041-210X.14185<\/a> <strong>(Project: 2021.09795.CPCA.A2@INCD)<\/strong><\/li>\n\n\n\n<li>Carneiro J, Pascoal F, Semedo M, Pratas D, Tomasino MP, Rego A, Carvalho MF, Mucha AP, Magalh\u00e3es C. Mapping human pathogens in wastewater using a metatranscriptomic approach. Environ Res. 2023 Aug 15;231(Pt 1):116040. doi: 10.1016\/j.envres.2023.116040 <strong>(Project: 2021.09782.CPCA.A2@INCD)<\/strong><\/li>\n\n\n\n<li>D. Gomes, VP Markevich, AR Peaker, J. Coutinho, \u201cDynamics of Hydrogen in Silicon at Finite Temperatures from First Principles\u201d, invited paper for the occasion of the 60th anniversary of Physica Status Solidi, Physica Status Solidi B 259, 2100670 (2022); <a href=\"\/en\/10.1002\/pssb.202100670\/\" target=\"_blank\" rel=\"noreferrer noopener\">doi:10.1002\/pssb.202100670<\/a> <strong>(Project: 2021.09643.CPCA.A2@HPC-UE)<\/strong><\/li>\n\n\n\n<li>TO Abdul Fattah, VP Markevich, JA De Guzman, J. Coutinho, NV Abrosimov, J. Binns, I. Crowe, MP Halsall, AR Peaker, \u201cDeep-level defects in Ga-doped silicon crystals\u201d, AIP Conference Proceedings 2826, 110001 (2023), SiliconPV-2022 conference, (March, Konstanz, Germany, 2022); <a href=\"doi:10.1063\/5.0140826\">doi:10.1063\/5.0140826<\/a> <strong>(Project: 2021.09643.CPCA.A2@HPC-UE)<\/strong><\/li>\n\n\n\n<li>TO Abdul Fattah, VP Markevich, JAT De Guzman, J. Coutinho, SB Lastovskii, ID Hawkins, IF Crowe, MP Halsall, AR Peaker, \u201cInteractions of Hydrogen Atoms with Acceptor-Dioxygen Complexes in Czochralski-Grown Silicon\u201d, Physica Status Solidi A 219, 2200176 (2022); <a href=\"\/en\/10.1002\/pssa.202200176\/\" target=\"_blank\" rel=\"noreferrer noopener\">doi:10.1002\/pssa.202200176<\/a> <strong>(Project: 2021.09643.CPCA.A2@HPC-UE)<\/strong><\/li>\n\n\n\n<li>J. Coutinho, D. Gomes, VJB Torres, TO Abdul Fattah, VP Markevich, and AR Peaker, \u201cTheory of reactions between hydrogen and group-III acceptors in silicon\u201d, Physical Review B 108, 014111 (2023); <a href=\"\/en\/10.1103\/PhysRevB.108.014111\/\" target=\"_blank\" rel=\"noreferrer noopener\">doi:10.1103\/PhysRevB.108.014111<\/a> <strong>(Project: 2021.09643.CPCA.A2@HPC-UE)<\/strong><\/li>\n\n\n\n<li>Jeyabalan SR et al \u201cNonlinear large-scale perturbations of a steady thermal convective dynamo regimes in a plane layer of electrically conducting fluid rotating about the vertical axis\u201d. Mathematics, Vol. 10, Iss. 16, 2957, 2022. Special issue \u201cNumerical Analysis and Scientific Computing II\u201d, section \u201cComputational and Applied Mathematics\u201d. <a href=\"\/en\/10.3390\/math10162957\/\" target=\"_blank\" rel=\"noreferrer noopener\">DOI:10.3390\/math10162957<\/a> <strong>(Project: 2021.09815.CPCA.A2@HPC-UE)<\/strong><\/li>\n\n\n\n<li>R. Chertovskih et al. \u201c\u201dOptimal control of nonlocal continuity equations: numerical solution\u201d. Applied Mathematics &amp; Optimization, Vol. 88, article no. 86, 2023. <a href=\"\/en\/10.1007\/s00245-023-10062-w\/\" target=\"_blank\" rel=\"noreferrer noopener\">DOI:10.1007\/s00245-023-10062-w<\/a> <strong>(Project: 2021.09815.CPCA.A2@HPC-UE)<\/strong><\/li>\n\n\n\n<li>R. Chertovskih et al. \u201cOptimal control of distributed ensembles with application to Bloch equations\u201d. IEEE Control Systems Letters, Vol. 7, pp. 2059-2064, 2023. <a href=\"\/en\/10.1109\/LCSYS.2023.3284205\/\" target=\"_blank\" rel=\"noreferrer noopener\">DOI:10.1109\/LCSYS.2023.3284205<\/a> <strong>(Project: 2021.09815.CPCA.A2@HPC-UE)<\/strong><\/li>\n\n\n\n<li>Moreno, MJ; Filipe, HAL; Cunha, SVP; Ramos, CV; Martins, PAT; Abel, B.; Loura, LMS; Ambudkar, SV, Interaction of a Homologous Series of Amphiphiles with P-glycoprotein in a Membrane Environment \u2013 Contributions of Polar and Non-Polar Interactions. Pharmaceutics 2023, 15 (1), 174. <a href=\"https:\/\/doi.org\/10.3390\/pharmaceutics15010174\" target=\"_blank\" rel=\"noreferrer noopener\">https:\/\/doi.org\/10.3390\/pharmaceutics15010174<\/a> <strong>(Project: 2021.09741.CPCA.A2@LCA-UC)<\/strong><\/li>\n\n\n\n<li>Oliveira, AC; Filipe, HAL; Loura, LMS, Fluorescent Probes cis- and trans-Parinaric Acids in Fluid and Gel Lipid Bilayers: A Molecular Dynamics Study. Molecules 2023, 28 (5), 2241.<a href=\"https:\/\/doi.org\/10.3390\/molecules28052241\" target=\"_blank\" rel=\"noreferrer noopener\"> https:\/\/doi.org\/10.3390\/molecules28052241<\/a> <strong>(Project: 2021.09741.CPCA.A2@LCA-UC)<\/strong><\/li>\n\n\n\n<li>Filipe, HAL; Loura, LMS; Moreno, MJ, Permeation of a Homologous Series of NBD-Labeled Fatty Amines through Lipid Bilayers: A Molecular Dynamics Study. Membranes 2023, 13 (6), 551. <a href=\"https:\/\/doi.org\/10.3390\/membranes13060551\">https:\/\/doi.org\/10.3390\/membranes13060551<\/a> <strong>(Project: 2021.09741.CPCA.A2@LCA-UC)<\/strong><\/li>\n\n\n\n<li>Filipe, HAL; Moreira, AF; Miguel, SP; Ribeiro, MP; Coutinho, P., Interaction of Near-Infrared (NIR)-Light Responsive Probes with Lipid Membranes: A Combined Simulation and Experimental Study. Pharmaceutics 2023, 15 (7), 1853. <a href=\"https:\/\/doi.org\/10.3390\/pharmaceutics15071853\" target=\"_blank\" rel=\"noreferrer noopener\">https:\/\/doi.org\/10.3390\/pharmaceutics15071853<\/a> <strong>(Project: 2021.09741.CPCA.A2@LCA-UC)<\/strong><\/li>\n\n\n\n<li>Cordeiro, MM; Filipe, HAL; Santos, P. d.; Samelo, J.; Ramalho, JPP; Loura, LMS; Moreno, MJ, Interaction of Hoechst 33342 with Lipid Membranes at Different pH Values. In Preprints.org, Preprints.org: 2023. <a href=\"https:\/\/www.preprints.org\/manuscript\/202307.0218\/v1\" target=\"_blank\" rel=\"noreferrer noopener\">https:\/\/www.preprints.org\/manuscript\/202307.0218\/v1<\/a> <strong>(Project: 2021.09741.CPCA.A2@LCA-UC)<\/strong><\/li>\n\n\n\n<li>Silva, TFD, Visca, H., Klumpp, C., Andreev, OA, Reshetnyak, YK, Machuqueiro, M. The Role of Arginine Residues in membrane interactions of pHLIP peptides. 2023. J. Chem. Inf. Model., 63, 14, 4433. <a href=\"https:\/\/doi.org\/10.1021\/acs.jcim.3c00360\" target=\"_blank\" rel=\"noreferrer noopener\">https:\/\/doi.org\/10.1021\/acs.jcim.3c00360<\/a> <strong>(Project: 2021.09635.CPCA.A2@LCA-UC)<\/strong><\/li>\n\n\n\n<li>M. Gra\u00e7a, D. Marques, S. Santander-Jim\u00e9nez, L. Sousa and A. Ilic, Interpreting High Order Epistasis Using Sparse Transformers. 2023. IEEE\/ACM Conference on Connected Health: Applications, Systems and Engineering Technologies (CHASE), Orlando, FL, USA, 2023, pp. 114-125. <a href=\"https:\/\/ieeexplore.ieee.org\/document\/10183767\" target=\"_blank\" rel=\"noreferrer noopener\">https:\/\/doi.org\/10.1145\/3580252.3586982<\/a> <strong>(Project: CPCA-IAC\/AV\/478750\/2022@GCP)<\/strong><\/li>\n\n\n\n<li>Marques da Silva, JA, Vieira de Carvalho, M., Cardoso Coelho, RP, Rodrigues Lopes, IA, &amp; Andrade Pires, FM On the representativeness of polycrystalline models with transformation induced plasticity. Finite Elements in Analysis and Design, 2023. 215, 103875. <a href=\"https:\/\/doi.org\/10.1016\/j.finel.2022.103875\" target=\"_blank\" rel=\"noreferrer noopener\">https:\/\/doi.org\/10.1016\/j.finel.2022.103875 <\/a><strong>(Project: CPCA\/A1\/420917\/2021@INCD)<\/strong><\/li>\n\n\n\n<li>Silva JPB, Istrate MC, Hellenbrand M, Jan A., Becker MT, Symonowicz J., Figueiras FG, Lenzi V., Hill MO, Ghica C, Romanyuk KN, Gomes MJM, Di Martino G., Marques L., MacManus-Driscoll JL. Ferroelectricity and negative piezoelectric coefficient in orthorhombic phase pure ZrO2 thin films. Applied Materials Today. Volume 30, 101708, 2023. <a rel=\"noreferrer noopener\" href=\"https:\/\/doi.org\/10.1016\/j.apmt.2022.101708\" target=\"_blank\">https:\/\/doi.org\/10.1016\/j.apmt.2022.101708<\/a> <strong>(Projects: CPCA\/A2\/5649\/2020@HPC-U\u00c9 and CPCA\/A2\/4628\/2020@MACC)<\/strong><\/li>\n<\/ul>\n\n\n<div class=\"wp-block-image is-resized\">\n<figure class=\"aligncenter size-full\"><img loading=\"lazy\" decoding=\"async\" width=\"200\" height=\"200\" src=\"https:\/\/rnca.fccn.pt\/wp-content\/uploads\/2022\/12\/image.png\" alt=\"\" class=\"wp-image-6324\" style=\"width:210px;height:auto\" srcset=\"https:\/\/rnca.fccn.pt\/wp-content\/uploads\/2022\/12\/image.png 200w, https:\/\/rnca.fccn.pt\/wp-content\/uploads\/2022\/12\/image-150x150.png 150w\" sizes=\"auto, (max-width: 200px) 100vw, 200px\" \/><figcaption class=\"wp-element-caption\"><em>in Silva JPB et al. 202<\/em>3<\/figcaption><\/figure>\n<\/div>\n\n\n<div style=\"height:66px\" aria-hidden=\"true\" class=\"wp-block-spacer\"><\/div>\n\n\n\n<h2 class=\"wp-block-heading\"><mark style=\"background-color:rgba(0, 0, 0, 0)\" class=\"has-inline-color has-vivid-green-cyan-color\">2022<\/mark><\/h2>\n\n\n\n<ul class=\"wp-block-list\">\n<li>JPB Silva, KC Sekhar, RF Negrea, C. Ghica, D. Dastan, MJM Gomes. Ferroelectric properties of ZrO2 films deposited on ITO-coated glass 2022. Ceramics International. Volume 48, Issue 5. <a href=\"https:\/\/doi.org\/10.1016\/j.ceramint.2021.11.152\">https:\/\/doi.org\/10.1016\/j.ceramint.2021.11.152<\/a> <strong>(Project: CPCA\/A2\/5649\/2020@HPC-UE)<\/strong><\/li>\n\n\n\n<li>Pina AF, Sousa SF, Azevedo L, Carneiro J. Non-B DNA conformations analysis through molecular dynamics simulations. Biochim Biophys Acta Gen Subj. 2022 Dec;1866(12):130252. doi: 10.1016\/j.bbagen.2022.130252  <strong>(Project: 2021.09782.CPCA.A2@INCD)<\/strong><\/li>\n\n\n\n<li>Boudjouan, F.; Zeghbib, W.; Carneiro, J.; Silva, R.; Morais, J.; Vasconcelos, V.; Lopes, G. Comparison Study on Wild and Cultivated Opuntia sp.: Chemical, Taxonomic, and Antioxidant Evaluations. Agriculture 2022, 12, 1755. <a href=\"https:\/\/doi.org\/10.3390\/agriculture12111755\" target=\"_blank\" rel=\"noreferrer noopener\">https:\/\/doi.org\/10.3390\/agriculture12111755<\/a> <strong>(Project: 2021.09782.CPCA.A2@INCD)<\/strong><\/li>\n\n\n\n<li>Lenzi V., Silva JBP, \u0160m\u00edd B, Matol\u00edn V., Istrate CM, Ghica C, MacManus-Driscoll JL, Marques L. Ferroelectricity induced by oxygen vacancies in rhombohedral ZrO2 thin films. Energy &amp; Environmental Materials. 2022.<a href=\"https:\/\/onlinelibrary.wiley.com\/doi\/10.1002\/eem2.12500\" target=\"_blank\" rel=\"noreferrer noopener\"> https:\/\/doi.org\/10.1002\/eem2.12500<\/a> <strong>(Project: CPCA\/A1\/415075\/2021@HPCUE)<\/strong><\/li>\n\n\n\n<li>Moreno M, Vila\u00e7a R and Ferreira PG. Scalable Transcriptomics Analysis with Dask: Applications in Data Science and Machine Learning. BMC Bioinformatics. 23:514. 2022. <a href=\"https:\/\/doi.org\/10.1186\/s12859-022-05065-3\" target=\"_blank\" rel=\"noreferrer noopener\">https:\/\/doi.org\/10.1186\/s12859-022-05065-3<\/a> <strong>(Project: CPCA\/A2\/2640\/2020<strong>@MACC<\/strong><\/strong><\/li>\n\n\n\n<li>Santos JM, Thomaz LA, Assuncao PAA, da Silva Cruz JA, T\u00e1vora LMN, Faria SMM, Hierarchical lossless coding of light fields with improved random access, Signal Processing: Image Communication, Volume 105, 2022, 116687, ISSN 0923-5965, <a href=\"https:\/\/doi.org\/10.1016\/j.image.2022.116687\" target=\"_blank\" rel=\"noreferrer noopener\">https:\/\/doi.org\/10.1016\/j.image.2022.116687<\/a> <strong>(Project: CPCA_A00_6782_2020<strong>@MACC<\/strong>)<\/strong><\/li>\n\n\n\n<li>Lu\u00eds, JP; Mata, AI; Sim\u00f5es, CJV; Brito, RMM Conformational Dynamics of the Soluble and Membrane-Bound Forms of Interleukin-1 Receptor Type-1: Insights into Linker Flexibility and Domain Orientation. Int. J. Mol. Sci. 2022, 23, 2599. <a rel=\"noreferrer noopener\" href=\"https:\/\/doi.org\/10.3390\/ijms23052599\" target=\"_blank\">https:\/\/doi.org\/10.3390\/ijms23052599<\/a><strong> (Project: CPCA\/A0\/7316\/2020@MACC)<\/strong><\/li>\n\n\n\n<li>Zhan, G., Cai, ZF., Struty\u0144ski, K.&nbsp;<em>et al.<\/em>&nbsp;Observing polymerization in 2D dynamic covalent polymers.&nbsp;<em>Nature<\/em>&nbsp;603<strong>,&nbsp;<\/strong>835\u2013840 (2022). <a href=\"https:\/\/doi.org\/10.1038\/s41586-022-04409-6\" target=\"_blank\" rel=\"noreferrer noopener\">https:\/\/doi.org\/10.1038\/s41586-022-04409-6<\/a> <strong>Project CPCA\/A2\/2524\/2020@MACC<\/strong><\/li>\n<\/ul>\n\n\n<div class=\"wp-block-image is-resized\">\n<figure class=\"aligncenter\"><img decoding=\"async\" src=\"https:\/\/media.springernature.com\/lw685\/springer-static\/image\/art%3A10.1038%2Fs41586-022-04409-6\/MediaObjects\/41586_2022_4409_Fig2_HTML.png\" alt=\"figure 2\"\/><figcaption class=\"wp-element-caption\"><em>in Zhan et al. 2022<\/em><\/figcaption><\/figure>\n<\/div>\n\n\n<ul class=\"wp-block-list\">\n<li>Martins, NMC; Covas, DIC Induced Circulation by Plunging and Submerged Jets in Circular Water Storage Tanks Using CFD. Water 2022, 14, 1277. <a href=\"https:\/\/doi.org\/10.3390\/w14081277\" target=\"_blank\" rel=\"noreferrer noopener\">https:\/\/doi.org\/10.3390\/w14081277<\/a> <strong>Project CPCA\/A2\/2568\/2020@MACC<\/strong><\/li>\n\n\n\n<li>Rajeev K. Dubey, M. Melle-Franco, and A. Mateo-Alonso. Inducing Single-Handed Helicity in a Twisted Molecular Nanoribbon. Journal of the American Chemical Society. 2022.<em>144<\/em>&nbsp;(6), 2765-2774. <a href=\"https:\/\/pubs.acs.org\/doi\/10.1021\/jacs.1c12385\" data-type=\"URL\" data-id=\"https:\/\/pubs.acs.org\/doi\/10.1021\/jacs.1c12385\" target=\"_blank\" rel=\"noreferrer noopener\">DOI: 10.1021\/jacs.1c12385<\/a> <strong>Project CPCA\/A2\/2524\/2020@MACC<\/strong><\/li>\n\n\n\n<li>Faroughi, SA; Roriz, AI;Fernandes, C. A Meta-Model toPredict the Drag Coefficient of a Particle Translating in Viscoelastic Fluids: A Machine Learning Approach. Polymers 2022, 14, 430. <a href=\"https:\/\/doi.org\/10.3390\/polym14030430\" target=\"_blank\" rel=\"noreferrer noopener\">https:\/\/doi.org\/10.3390\/polym14030430<\/a><strong> Project CPCA\/A2\/6052\/2020@MACC<\/strong><\/li>\n\n\n\n<li>Fernandes, C., Faroughi, S.A., Ribeiro, R.&nbsp;<em>et al.<\/em>&nbsp;Finite volume simulations of particle-laden viscoelastic fluid flows: application to hydraulic fracture processes.&nbsp;<em>Engineering with Computers<\/em>&nbsp;(2022). <a href=\"https:\/\/doi.org\/10.1007\/s00366-022-01626-5\" target=\"_blank\" rel=\"noreferrer noopener\">https:\/\/doi.org\/10.1007\/s00366-022-01626-5<\/a> <strong>(Project: CPCA\/A2\/6052\/2020@MACC<\/strong><\/li>\n\n\n\n<li>Pina AF, Sousa SF, Cerqueira NMFSA,&nbsp;<em>ChemBioChem<\/em>&nbsp;2022,&nbsp;<em>23<\/em>, e202100555. <a href=\"https:\/\/doi.org\/10.1002\/cbic.202100555\" target=\"_blank\" rel=\"noreferrer noopener\">https:\/\/doi.org\/10.1002\/cbic.202100555<\/a> <strong>@INCD<\/strong><\/li>\n\n\n\n<li>Fernandes, HS, Sousa, SF &amp; Cerqueira, NMFSA New insights into the catalytic mechanism of the SARS-CoV-2 main protease: an ONIOM QM\/MM approach.&nbsp;<em>Mol Divers<\/em>&nbsp;26,<strong>&nbsp;<\/strong>1373\u20131381 (2022). <a href=\"https:\/\/doi.org\/10.1007\/s11030-021-10259-7\" target=\"_blank\" rel=\"noreferrer noopener\">https:\/\/doi.org\/10.1007\/s11030-021-10259-7<\/a> <strong>Projects CPCA\/A00\/7140\/2020 and CPCA\/A00\/7145\/2020@INCD<\/strong><\/li>\n\n\n\n<li>Bonilla, C., Hernandez, AEC, Gon\u00e7alves, J.&nbsp;<em>et al.<\/em>&nbsp;Collider signatures of vector-like fermions from a flavor symmetric model.&nbsp;<em>J. High Energ. Phys.<\/em><strong>&nbsp;<\/strong>2022, 154. <a href=\"https:\/\/doi.org\/10.1007\/JHEP01(2022)154\" target=\"_blank\" rel=\"noreferrer noopener\">https:\/\/doi.org\/10.1007\/JHEP01(2022)154<\/a> <strong>Project CPCA\/A00\/7395\/2020@INCD<\/strong><\/li>\n\n\n\n<li>Gadelho, J., Guedes Soares, C., Barajas, G., &amp; Lara, J.L. CFD analysis of the PTO damping on the performance of an onshore dual chamber OWC. 2022. n C. Guedes Soares &amp; T.A. Santos, Trends in Maritime Technology and Engineering Volume 2 (1st ed., pp. 381-389). CRC Press. <a href=\"https:\/\/doi.org\/10.1201\/9781003320289-40\">https:\/\/doi.org\/10.1201\/9781003320289-40<\/a> <strong>(Project: CPCA\/A1\/407670\/2021@INCD)<\/strong><\/li>\n\n\n\n<li>Gadelho, J., &amp; Guedes Soares, C.,. Pneumatic performance improvement of an onshore dual chamber OWC using a CFD model. 2022. In Trends in Renewable Energies Offshore (Guedes Soares C., (Ed.). <a rel=\"noreferrer noopener\" href=\"https:\/\/doi.org\/10.1201\/9781003360773-36\" target=\"_blank\">https:\/\/doi.org\/10.1201\/9781003360773-36<\/a><strong> <\/strong><strong>(Project: CPCA\/A1\/407670\/2021@INCD)<\/strong><\/li>\n\n\n\n<li>Rosa A, Cardoso C, Vieira R, Faria R, Oliveira AR, Navarro G and Caldeira RMA (2022) Impact of Flash Flood Events on the Coastal Waters Around Madeira Island: The \u201cLand Mass Effect\u201d. Front. Mar Sci 8:749638. <a href=\"https:\/\/www.frontiersin.org\/articles\/10.3389\/fmars.2021.749638\/full\" data-type=\"URL\" data-id=\"https:\/\/www.frontiersin.org\/articles\/10.3389\/fmars.2021.749638\/full\" target=\"_blank\" rel=\"noreferrer noopener\">doi: 10.3389\/fmars.2021.749638<\/a> <strong>@INCD<\/strong><\/li>\n<\/ul>\n\n\n<div class=\"wp-block-image is-resized\">\n<figure class=\"aligncenter\"><img decoding=\"async\" src=\"https:\/\/www.frontiersin.org\/files\/Articles\/749638\/fmars-08-749638-HTML\/image_m\/fmars-08-749638-g004.jpg\" alt=\"www.frontiersin.org\" style=\"width:508px;height:auto\"\/><figcaption class=\"wp-element-caption\">in Rosa et. al 2022<\/figcaption><\/figure>\n<\/div>\n\n\n<ul class=\"wp-block-list\">\n<li>Carlos Couto, Diogo Oliveira, Paulo Vila Real. A Study on the Capacity of Steel Portal Frames using Shell Finite Elements. Structural elements. Volume 5, Issue 4, September 2022, Pages 1017-10262022. <a href=\"https:\/\/doi.org\/10.1002\/cepa.1846\">https:\/\/doi.org\/10.1002\/cepa.1846<\/a> <strong>(Project: CPCA\/A1\/405417\/2021<strong>@LCAUC<\/strong><\/strong>)<\/li>\n\n\n\n<li>Couto C, Tong Q, Gernay T, Predicting the capacity of thin-walled beams at elevated temperature with machine learning, Fire Safety Journal, Volume 130, 2022, 103596, ISSN 0379-7112, <a rel=\"noreferrer noopener\" href=\"https:\/\/doi.org\/10.1016\/j.firesaf.2022.103596\" target=\"_blank\">https:\/\/doi.org\/10.1016\/j.firesaf.2022.103596<\/a> <strong>(Project: CPCA\/A1\/6717\/2020<strong>@LCAUC<\/strong><\/strong>)<\/li>\n\n\n\n<li>Couto C, Neural network models for the critical bending moment of uniform and tapered beams,Structures,Volume 41,2022,Pages 1746-1762,ISSN 2352-0124, <a href=\"https:\/\/doi.org\/10.1016\/j.istruc.2022.05.096\">https:\/\/doi.org\/10.1016\/j.istruc.2022.05.096<\/a><strong> (Project: CPCA\/A1\/6717\/2020<strong>@LCAUC<\/strong>)<\/strong><\/li>\n\n\n\n<li>Ria\u00f1o A., K. Struty\u0144ski, M. Liu, CT Stoppiello, B. Lerma-Berlanga, A. Saeki, C. Mart\u00ed-Gastaldo, AN Khlobystov, G. Valenti, F. Paolucci, M. Melle-Franco, A. Mateo-Alonso, An Expanded 2D Fused Aromatic Network with 90-Ring Hexagons. 2022. <em>Angew. Chem. Int. Ed.<\/em>&nbsp;&nbsp;<em>61<\/em>, e202113657. <a rel=\"noreferrer noopener\" href=\"https:\/\/doi.org\/10.1002\/anie.202113657\" target=\"_blank\">https:\/\/doi.org\/10.1002\/anie.202113657<\/a> <strong>(Project: CPCA\/A2\/2524\/2020@LCAUC)<\/strong><\/li>\n<\/ul>\n\n\n\n<div style=\"height:100px\" aria-hidden=\"true\" class=\"wp-block-spacer\"><\/div>\n\n\n\n<h2 class=\"wp-block-heading\"><mark style=\"background-color:rgba(0, 0, 0, 0)\" class=\"has-inline-color has-vivid-green-cyan-color\">2021<\/mark><\/h2>\n\n\n\n<ul class=\"wp-block-list\">\n<li>Pedro R. Figueiredo, Ricardo D. Gonz\u00e1lez, Alexandra TP Carvalho. Human Carboxylesterase 2 in Cocaine Metabolism. Molecular Catalysis. 2021. Volume 515, 111938. <a href=\"https:\/\/doi.org\/10.1016\/j.mcat.2021.111938\" target=\"_blank\" rel=\"noreferrer noopener\">https:\/\/doi.org\/10.1016\/j.mcat.2021.111938<\/a>. <strong>(Project: CPCA\/A2\/4568\/2020@MACC)<\/strong><\/li>\n\n\n\n<li>Lenzi V, Cavaleiro A, Fernandes F, Marques L, Diffusion of silver in Titanium Nitride: Insights from density functional theory and molecular dynamics, Applied Surface Science, 556:149738, 2021, <a href=\"https:\/\/doi.org\/10.1016\/j.apsusc.2021.149738\" target=\"_blank\" rel=\"noreferrer noopener\">https:\/\/doi.org\/10.1016\/j.apsusc.2021.149738<\/a>  <strong>(Project: CPCA_A2_5649_2020@HPCUE)<\/strong><\/li>\n\n\n\n<li>Coutinho J, Gouveia JD, Makino T, Ohshima T, Pastuovi\u0107 \u017d., Bakra\u010d L., Brodar T., and Capan I.. M center in 4H-SiC is a carbon self-interstitia.l. Phys. Rev. B 103, L180102. 2021. <a rel=\"noreferrer noopener\" href=\"https:\/\/journals.aps.org\/prb\/abstract\/10.1103\/PhysRevB.103.L180102\" target=\"_blank\">https:\/\/doi.org\/10.1103\/PhysRevB.103.L180102<\/a> <a rel=\"noreferrer noopener\" href=\"https:\/\/doi.org\/10.1016\/j.apsusc.2021.149738\" target=\"_blank\">021.149738<\/a> <strong> (Project: CPCA_A0_7277_2020@HPCUE)<\/strong><\/li>\n<\/ul>\n\n\n<div class=\"wp-block-image is-resized\">\n<figure class=\"aligncenter size-full\"><img loading=\"lazy\" decoding=\"async\" width=\"500\" height=\"164\" src=\"https:\/\/rnca.fccn.pt\/wp-content\/uploads\/2022\/03\/image-publication.png\" alt=\"\" class=\"wp-image-3378\" srcset=\"https:\/\/rnca.fccn.pt\/wp-content\/uploads\/2022\/03\/image-publication.png 500w, https:\/\/rnca.fccn.pt\/wp-content\/uploads\/2022\/03\/image-publication-300x98.png 300w\" sizes=\"auto, (max-width: 500px) 100vw, 500px\" \/><figcaption class=\"wp-element-caption\">in Coutinho et. al, 2021<\/figcaption><\/figure>\n<\/div>\n\n\n<ul class=\"wp-block-list\">\n<li>Apolin\u00e1rio, L., Castro, NF, Rom\u00e3o, MC&nbsp;<em>et al.<\/em>&nbsp;Deep Learning for the classification of quenched jets.&nbsp;<em>J. High Energ. Phys.<\/em>&nbsp;2021<strong>,&nbsp;<\/strong>219 (2021). <a href=\"https:\/\/doi.org\/10.1007\/JHEP11(2021)219\" target=\"_blank\" rel=\"noreferrer noopener\">https:\/\/doi.org\/10.1007\/JHEP11(2021)219<\/a>  <strong>@HPCUE<\/strong><\/li>\n\n\n\n<li>Crispim Rom\u00e3o, M., Castro, NF &amp; Pedro, R. Finding new physics without learning about it: anomaly detection as a tool for searches at colliders.&nbsp;<em>Eur. Phys. J. C<\/em><strong>&nbsp;<\/strong>81<strong>,&nbsp;<\/strong>27 (2021). <a href=\"https:\/\/doi.org\/10.1140\/epjc\/s10052-020-08807-w\" target=\"_blank\" rel=\"noreferrer noopener\">https:\/\/doi.org\/10.1140\/epjc\/s10052-020-08807-w<\/a> <strong>@HPCUE<\/strong><\/li>\n\n\n\n<li>Almeida BC, Kaczmarek JA, Figueiredo PR, Prather KLJ and Carvalho ATP. Transcription factor allosteric regulation through substrate coordination to zinc, NAR Genomics and Bioinformatics 2021, 3 (2),  <a rel=\"noreferrer noopener\" href=\"https:\/\/doi.org\/10.1093\/nargab\/lqab033\" target=\"_blank\">https:\/\/doi.org\/10.1093\/nargab\/lqab033<\/a> <strong>(Project: CPCA_A2_4568_2020@MACC)<\/strong><\/li>\n\n\n\n<li>Fakhari A., Tukovic Z., Carneiro OS, and Fernandes C. An Effective Interface Tracking Method for Simulating the Extrudate Swell Phenomenon. Polymers. Apr; 13(8): 1305. 2021. <a href=\"https:\/\/doi.org\/10.3390\/polym13081305\" target=\"_blank\" rel=\"noreferrer noopener\">https:\/\/doi.org\/10.3390\/polym13081305<\/a> <strong>(Project: CPCA_A00_6057_2020 <strong>@MAC<\/strong><\/strong>W<strong>)<\/strong><\/li>\n\n\n\n<li>Cruz F. and Mota J.,Structure and thermodynamics of empty clathrate hydrates below the freezing point of water. Phys Chem Chem Phys. 23(30):16033-16043. 2021. <a href=\"https:\/\/doi.org\/10.1039\/d1cp00893e\" target=\"_blank\" rel=\"noreferrer noopener\">https:\/\/doi.org\/10.1039\/d1cp00893e<\/a> <strong>(Project: CPCA_A2_2613_2020<strong>@MACC<\/strong>)<\/strong><\/li>\n\n\n\n<li>Fernandes C., Faroughi SA, Ribeiro R., Isabel A., Mckinley G., (2021). Finite Volume Simulations of Particle-laden Viscoelastic Fluid Flows: Application To Hydraulic Fracture Processes. <a href=\"https:\/\/www.sciencegate.app\/document\/10.21203\/rs.3.rs-1009381\/v1\" data-type=\"URL\" data-id=\"https:\/\/www.sciencegate.app\/document\/10.21203\/rs.3.rs-1009381\/v1\" target=\"_blank\" rel=\"noreferrer noopener\">10.21203\/rs.3.rs-1009381\/v1<\/a> <strong>(Project: CPCA_A2_6052_2020<strong>@MACC<\/strong>)<\/strong><\/li>\n\n\n\n<li>Gernot Eichmann, JM Pawlowski, and JM Silva. Mass generation in Landau-gauge Yang-Mills theory. 2021. Phys. Rev. D 104, 114016. <a href=\"https:\/\/doi.org\/10.1103\/PhysRevD.104.114016\" target=\"_blank\" rel=\"noreferrer noopener\">https:\/\/doi.org\/10.1103\/PhysRevD.104.114016<\/a> <strong>(Project: CPCA_A0_7291_2020<strong>@MACC<\/strong>)<\/strong><\/li>\n\n\n\n<li>Fernandes, IS, de Brito, MSeCA, Manrique, YA, Dias, MM, Lopes, JCB and Santos, RJ (2021), Computational Fluid Dynamics Model of Two-Phase Flow in NETmix Reactors. Chem. Eng. Technol., 44: 2002-2010.&nbsp;<a href=\"https:\/\/doi.org\/10.1002\/ceat.202100245\" target=\"_blank\" rel=\"noreferrer noopener\">https:\/\/doi.org\/10.1002\/ceat.202100245<\/a> <strong>(Project: CPCA_A0_7324_2020<strong>@MACC<\/strong>)<\/strong><\/li>\n\n\n\n<li>Matos J, Santos RJ, Dias MM andLopes JCB (2021) Mixing in the NETmix Reactor. Front. Chem. Eng 3:771476. <a href=\"https:\/\/www.frontiersin.org\/articles\/10.3389\/fceng.2021.771476\/full\" data-type=\"URL\" data-id=\"https:\/\/www.frontiersin.org\/articles\/10.3389\/fceng.2021.771476\/full\" target=\"_blank\" rel=\"noreferrer noopener\">doi: 10.3389\/fceng.2021.771476<\/a> <strong>(Project: CPCA_A0_7324_2020<strong>@MACC<\/strong>)<\/strong><\/li>\n\n\n\n<li>Castellanos P., Brito AC, Chainho P., Quintella BR, da Costa L., Fran\u00e7a S., Cabral H., Costa JL, CoastNet Dataset From Mondego, Tejo, and Mira Estuaries: Multiparametric Measurements During 2020. 2021. Frontiers in Marine Science. Volume 8. DOI=10.3389\/fmars.2021.707089<strong> (Project: CPCA_A2_7255_2020@INCD)<\/strong><\/li>\n\n\n\n<li>Cereja, R., V. Brotas, JPC Cruz, M. Rodrigues &amp; AC Brito. Tidal and physicochemical effects on phytoplankton community variability at Tagus estuary (Portugal). Frontiers in Marine Science, 8: 675699. 2021.<a href=\"https:\/\/doi.org\/10.3389\/fmars.2021.675699\" target=\"_blank\" rel=\"noreferrer noopener\">https:\/\/doi.org\/10.3389\/fmars.2021.675699<\/a> <strong>(Project: CPCA_A2_7255_2020<strong>@INCD<\/strong>)<\/strong><\/li>\n\n\n\n<li>Fran\u00e7a, S., V. F. Fonseca, S. E. Tanner, R. P. Vasconcelos, P. Reis-Santos, A. Maia, M. Ruano, I. Cardoso, S. Henriques, M. P. Pais, P. Brand\u00e3o, A. C. Brito, P. Castellanos, P. Chainho, B. Quintella, L. Costa, M. J. Costa, J. L. Costa &amp; H. N. Cabral. Historical data in the CoastNet Geoportal: documenting fish assemblages in Portuguese estuaries. Frontiers in Marine Science, 8: 685294. 2021. <a href=\"https:\/\/doi.org\/10.3389\/fmars.2021.685294\" target=\"_blank\" rel=\"noreferrer noopener\">https:\/\/doi.org\/10.3389\/fmars.2021.685294<\/a> <strong>(Project: CPCA_A2_7255_2020<strong>@INCD<\/strong>)<\/strong><\/li>\n\n\n\n<li>Bonilla C., Carcamo Hernandez AE, Goncalves J, Freitas FF, Morais AP and Pasechnik R. Collider signatures of vector-like fermions from a flavor symmetric 2HDM. 2021. <a href=\"https:\/\/arxiv.org\/pdf\/2107.14165.pdf\" data-type=\"URL\" data-id=\"https:\/\/arxiv.org\/pdf\/2107.14165.pdf\" target=\"_blank\" rel=\"noreferrer noopener\">URL<\/a> <strong>@INCD<\/strong><\/li>\n\n\n\n<li>D. Quelhas, J. Carneiro, M. Lopes-Marques, J. Jaeken, E. Martins, J. F. Rocha, S. S. Teixeira Carla, C. R. Ferreira, S. F. Sousa, L. Azevedo, Assessing the effects of PMM2 variants on protein stability, Molecular Genetics and Metabolism, Volume 134, Issue 4, 2021, Pages 344\u2013352, ISSN 1096-7192, <a href=\"https:\/\/doi.org\/10.1016\/j.ymgme.2021.11.002\" target=\"_blank\" rel=\"noreferrer noopener\">https:\/\/doi.org\/10.1016\/j.ymgme.2021.11.002<\/a> <strong>@INCD<\/strong><\/li>\n\n\n\n<li>Serrano, C., Teixeira, CSS, Cooper, D.N.&nbsp;<em>et al.<\/em>&nbsp;Compensatory epistasis explored by molecular dynamics simulations.&nbsp;<em>Hum Genet<\/em>&nbsp;140, 1329\u20131342 (2021). <a href=\"https:\/\/doi.org\/10.1007\/s00439-021-02307-x\" target=\"_blank\" rel=\"noreferrer noopener\">https:\/\/doi.org\/10.1007\/s00439-021-02307-x<\/a><strong> Projects CPCA\/A00\/7140\/2020 and <strong>CPCA\/A00\/7145\/2020<\/strong>@INCD<\/strong><\/li>\n\n\n\n<li>Vieira, TF; Martins, FG; Moreira, JP; Barbosa, T.; Sousa, SF In Silico Identification of Possible Inhibitors for Protein Kinase B (PknB) of Mycobacterium tuberculosis. Molecules 2021, 26, 6162. <a href=\"https:\/\/doi.org\/10.3390\/molecules26206162\" target=\"_blank\" rel=\"noreferrer noopener\">https:\/\/doi.org\/10.3390\/molecules26206162<\/a> <strong>Projects CPCA\/A00\/7140\/2020 and <strong>CPCA\/A00\/7145\/2020<\/strong>@INCD<\/strong><\/li>\n\n\n\n<li>Santos-Pereira C, Rocha JF, Fernandes HS, Rodrigues LR, C\u00f4rte-Real M., Sousa SF, The milk-derived lactoferrin inhibits V-ATPase activity by targeting its V1 domain, International Journal of Biological Macromolecules, Volume 186, 2021, Pages 54\u201370, ISSN 0141-8130, <a href=\"https:\/\/doi.org\/10.1016\/j.ijbiomac.2021.06.200\" target=\"_blank\" rel=\"noreferrer noopener\">https:\/\/doi.org\/10.1016\/j.ijbiomac.2021.06.200<\/a> <strong>@INCD<\/strong><\/li>\n\n\n\n<li>Martins, FG; Melo, A.; Sousa, SF Identification of New Potential Inhibitors of Quorum Sensing through a Specialized Multi-Level Computational Approach. Molecules 2021, 26, 2600. <a href=\"https:\/\/doi.org\/10.3390\/molecules26092600\" target=\"_blank\" rel=\"noreferrer noopener\">https:\/\/doi.org\/10.3390\/molecules26092600<\/a><strong> Projects CPCA\/A00\/7140\/2020 and <strong>CPCA\/A00\/7145\/2020<\/strong>@INCD<\/strong><\/li>\n\n\n\n<li>Teixeira MAL, Nygren A, Ravara A, Vieira PE, Hern\u00e1ndez JC, Costa FO (2021) The small polychaete Platynereis dumerilii revealed as a large species complex with fourteen MOTUs in European marine habitats. ARPHA Conference Abstracts 4: e64937. <a href=\"https:\/\/doi.org\/10.3897\/aca.4.e64937\" target=\"_blank\" rel=\"noreferrer noopener\">https:\/\/doi.org\/10.3897\/aca.4.e64937<\/a> <strong>(Project: CPCA_A1_7359_2020<strong>@INCD<\/strong>)<\/strong><\/li>\n\n\n\n<li>Parracho JO, Thomaz LA, T\u00e1vora LMN, . Assun\u00e7\u00e3o PA A and S Faria . MM, \u201cCross-modality Lossless Compression of PET-CT Images,\u201d&nbsp;<em>2021 Telecoms Conference (ConfTELE)<\/em>, 2021, pp. 1-6, <a href=\"https:\/\/ieeexplore.ieee.org\/document\/9435467\" data-type=\"URL\" data-id=\"https:\/\/ieeexplore.ieee.org\/document\/9435467\" target=\"_blank\" rel=\"noreferrer noopener\">doi: 10.1109\/ConfTELE50222.2021.9435467<\/a> <strong>(Project: CPCA_A2_6986_2020<strong>@INCD<\/strong>)<\/strong><\/li>\n<\/ul>\n\n\n\n<div style=\"height:76px\" aria-hidden=\"true\" class=\"wp-block-spacer\"><\/div>\n\n\n\n<h2 class=\"wp-block-heading\"><mark style=\"background-color:rgba(0, 0, 0, 0)\" class=\"has-inline-color has-vivid-green-cyan-color\">2020<\/mark><\/h2>\n\n\n\n<ul class=\"wp-block-list\">\n<li>Pedro J., Ram\u00f4a B., N\u00f3brega JM, and Fernandes C., Verification and validation of openinjmoldsim, an open-source solver to model the filling stage of thermoplastic injection molding, Fluids, vol. 5, iss. 2, p. 84. 2020. <a href=\"https:\/\/doi.org\/10.3390\/fluids5020084\" target=\"_blank\" rel=\"noreferrer noopener\">https:\/\/doi.org\/10.3390\/fluids5020084<\/a> <strong>Pre-CPCA@MACC Project<\/strong><\/li>\n<\/ul>\n\n\n<div class=\"wp-block-image is-resized\">\n<figure class=\"aligncenter\"><img decoding=\"async\" src=\"https:\/\/www.mdpi.com\/fluids\/fluids-05-00084\/article_deploy\/html\/images\/fluids-05-00084-g010-550.jpg\" alt=\"\" style=\"width:398px;height:auto\"\/><figcaption class=\"wp-element-caption\"><em>In <\/em>Pedro J. et al, 2020<\/figcaption><\/figure>\n<\/div>\n\n\n<div style=\"height:52px\" aria-hidden=\"true\" class=\"wp-block-spacer\"><\/div>\n\n\n\n<p class=\"has-text-align-right\"><em>Last updated September 2025<\/em><\/p>","protected":false},"excerpt":{"rendered":"<p>Publica\u00e7\u00f5es associadas a Projetos de Computa\u00e7\u00e3o Avan\u00e7ada Como referenciar a FCT e o seu projeto computacional em artigos cient\u00edficos ou confer\u00eancias? Exemplo standard em ingl\u00eas para projetos nacionais: &#8220;This work &#8230;<\/p>","protected":false},"author":2,"featured_media":0,"parent":0,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"","meta":{"inline_featured_image":false,"_monsterinsights_skip_tracking":false,"_monsterinsights_sitenote_active":false,"_monsterinsights_sitenote_note":"","_monsterinsights_sitenote_category":0,"footnotes":""},"class_list":["post-2479","page","type-page","status-publish","hentry"],"_links":{"self":[{"href":"https:\/\/rnca.fccn.pt\/en\/wp-json\/wp\/v2\/pages\/2479","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/rnca.fccn.pt\/en\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/rnca.fccn.pt\/en\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/rnca.fccn.pt\/en\/wp-json\/wp\/v2\/users\/2"}],"replies":[{"embeddable":true,"href":"https:\/\/rnca.fccn.pt\/en\/wp-json\/wp\/v2\/comments?post=2479"}],"version-history":[{"count":144,"href":"https:\/\/rnca.fccn.pt\/en\/wp-json\/wp\/v2\/pages\/2479\/revisions"}],"predecessor-version":[{"id":10705,"href":"https:\/\/rnca.fccn.pt\/en\/wp-json\/wp\/v2\/pages\/2479\/revisions\/10705"}],"wp:attachment":[{"href":"https:\/\/rnca.fccn.pt\/en\/wp-json\/wp\/v2\/media?parent=2479"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}